Welcome to suite2p’s documentation!

suite2p is an imaging processing pipeline written in Python 3 which includes the following modules:

  • Registration

  • Cell detection

  • Spike detection

  • Visualization GUI

For examples of how the output looks and how the GUI works, check out this twitter thread.

This code was written by Carsen Stringer and Marius Pachitariu. For support, please open an issue.

The reference paper is here. The deconvolution algorithm is based on this paper, with settings based on this paper.

We make pip installable releases of suite2p, here is the pypi. You can install it as pip install suite2p