Skip to content

Welcome to suite2p's documentation!#

image

suite2p is an imaging processing pipeline written in Python 3 which includes the following modules:

  • Registration
  • ROI detection
  • Signal extraction
  • ROI classification
  • Spike deconvolution
  • Visualization GUI

For examples of how the output looks and how the GUI works, check out this twitter thread.

For software support, please open an issue. For general questions, please use forum.image.sc

The reference paper is here. The deconvolution algorithm is based on this paper, with settings based on this paper.

We make pip installable releases of suite2p, here is the pypi. You can install it as pip install suite2p